What does the controller icon in the top right corner mean in MGS 5 Phantom Pain (PS3)?

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I've noticed that during the cutscenes in the Prologue part, sometimes a controller icon would pop up in the top-right corner of the screen. What does it mean? Is it to indicate that the cutscene is about to transition back to gameplay?
Sometimes I turn off the controller during cutscenes as MGS is notorious for having some fairly long/drawn out ones. Could it be that?
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