What's up with this double counter in Splat Zone mode?

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There was originally only one mode in ranked mode in Splatoon. Sort of King of the Hill, with a countdown timer which counts down when all zones are dominated by one team. However, sometimes a second counter becomes active. What does it do, where is it for, how does it help me win, how is this taken into account for scoring, et cetera.
So, in short, what is this second counter?
Picture included. Of course in the heat of the battle, but you'll get the idea.
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Images: Max Vakhtbovych, Max Vakhtbovych, Max Vakhtbovych, Max Vakhtbovych